PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_20833_BGI-A2_v1.0

Common Name

F383_11866

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 398aa MW: 44721.7 Da PI: 9.5964

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20833_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	358	377	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ ++ r+++L++H+ Cotton_A_20833_BGI-A2_v1.0 358 FRCTICNITCGRSEDLNSHL 377 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03134	4.1E-22	27	103	IPR004345	TB2/DP1/HVA22-related protein
SuperFamily	SSF57667	1.28E-10	204	251	No hit	No description
SMART	SM00451	2.8E-4	218	252	IPR003604	Zinc finger, U1-type
SMART	SM00355	0.31	221	245	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	1.5E-9	221	245	No hit	No description
SuperFamily	SSF57667	3.12E-8	346	389	No hit	No description
SMART	SM00451	5.9E-4	355	389	IPR003604	Zinc finger, U1-type
SMART	SM00355	5.5	358	382	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	2.3E-4	358	382	No hit	No description
PROSITE pattern	PS00028	0	360	382	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGFQALVKLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE 60 HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNRFV HPCLYMDLPT IINWFKKQQD 120 LFLKDNFLVE VADDCVKAHG PTEVQEKLIA NEPKGTETSI LQKGIKPVQI TEKWEVAPIP 180 KTDPNVIQTV NNTTATLPET VGEVGPDLPE IPSDKQVQKE WTCAMCQVTT TSEKTLNSHL 240 RGRKHKNNLM QANNQPCKGK AGLVSKVKQS EVSRKEPQKK GSKKQEPPKG QKSASSAACS 300 NAVNPKTEMS KSNLPKEESK KAIPTTNMVG NHVKSSENVQ GQQQQVGKKH DKTKIPQFRC 360 TICNITCGRS EDLNSHLWGR KHLANIQKLN NLGEGQLA

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGFQALVKLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE  60
HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNRFV HPCLYMDLPT IINWFKKQQD  120
LFLKDNFLVE VADDCVKAHG PTEVQEKLIA NEPKGTETSI LQKGIKPVQI TEKWEVAPIP  180
KTDPNVIQTV NNTTATLPET VGEVGPDLPE IPSDKQVQKE WTCAMCQVTT TSEKTLNSHL  240
RGRKHKNNLM QANNQPCKGK AGLVSKVKQS EVSRKEPQKK GSKKQEPPKG QKSASSAACS  300
NAVNPKTEMS KSNLPKEESK KAIPTTNMVG NHVKSSENVQ GQQQQVGKKH DKTKIPQFRC  360
TICNITCGRS EDLNSHLWGR KHLANIQKLN NLGEGQLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632321.1	0.0	PREDICTED: uncharacterized protein LOC108474810
TrEMBL	A0A0B0N8Y4	0.0	A0A0B0N8Y4_GOSAR; HVA22-like protein
STRING	Gorai.005G226700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20603	3	4