PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21125_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 643aa    MW: 70919.3 Da    PI: 7.0317
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21125_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07256276526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ f++ G Ck Gd+C +aHg
  Cotton_A_21125_BGI-A2_v1.0 256 PCPEFRK-GSCKQGDNCEYAHG 276
                                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1417137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-1718177IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.09660165IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0746090IPR002110Ankyrin repeat
CDDcd002041.15E-1162158No hitNo description
PROSITE profilePS5008811.83595130IPR002110Ankyrin repeat
PfamPF000230.001495129IPR002110Ankyrin repeat
SMARTSM002480.008395127IPR002110Ankyrin repeat
PROSITE profilePS5010313.319251278IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5251277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4254278IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4284315IPR000571Zinc finger, CCCH-type
SMARTSM0035617286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNDSSHKVDR VPQKFSYLLE LSASNDLIGF RNAIEREGRD IDERSLWYGM RMGSRKIGFE  60
ERTPLLIASL FGSKDVVNYI IGSGSVDVNR ATGSDGATSL HCAVVGGSYN STEVVRTLLN  120
ASADTNALDA NGNRPSDLIA PAYNSSFSSR KKILESLLEG SGNVSEIYGL PAKIEACNST  180
RRVLKDGVEK KEYPIDVTLP DIKNGMYGTD EFRMYNFKVT PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKY QYSCVPCPEF RKGSCKQGDN CEYAHGIFEC WLHPAQYRTR LCKDETNCNR  300
RVCFFAHKPE ELRPVYVSTG SAVPSPRSYS ATGSVLDMGS MSTHALGSPS VMIPPTSTPP  360
LTPTGTSSST TETTWPNQSN IIPTLQLHGS KLKAARCARN LELNIEQLGR ESHLRRQKQQ  420
LMDEIPGLSS PTNWNNPLST TSAFSASADQ TSELNRFKGM KPLDLTSLPQ LQGISLDAST  480
HQLQSPTGVQ MPQNTNEQLH ASYPTSLAAP PVRASQSFRV EPSKPTATTV LSPRPIAFAN  540
WSQGFMEHTT VNHHLGFSSP GSFASAMPSK FSNWILLDGK LDWDVQGDEL NKLKKPSLAF  600
QNSDTNFGNP SQSMSPTSNE PDVSWVQSLL KDTSSEQLNF EDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668851.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U8HS950.0A0A1U8HS95_GOSHI; zinc finger CCCH domain-containing protein 66-like
STRINGGorai.006G106200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein