PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21139_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 398aa    MW: 43657.5 Da    PI: 6.9469
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21139_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09209265561
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                 kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   +     l++
  Cotton_A_21139_BGI-A2_v1.0 209 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLVQRDTNGLTA 265
                                 9****************************************9999877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-15205269IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599207270IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-10209262No hitNo description
SuperFamilySSF579591.62E-10209260No hitNo description
PfamPF001702.3E-8209257IPR004827Basic-leucine zipper domain
CDDcd147033.07E-24210259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEKDKSPGLL PPSGRFPGFS SPGIAPNNFN PKTEKGSFGQ TSENNHFSHD ISKMPDNPPK  60
KLGHRRAHSE ILTLPDDISF DSDTGIVGAA DGPSYSDEAE DDLFSIYLDM DKFNSSSATS  120
TCQVGESSEA AAPVAVPAKS GLSSGENISN GIGSSMKPRV RHQHSQSMDG STSIKPEMLM  180
SGSEEVSPAD SKKAMSAANL AELALIDPKR AKRIWANRQS AARSKERKMR YIAELERKVQ  240
TLQTEATSLS AQLTLVQRDT NGLTAENSEL KLRLQAMEQQ VHLQDALNDA MKEEIWHLKM  300
LTVQSMPNGG GIMNFASFGA SQHYYPNNHA KHTLLAAQQF QQLQIHSQKH QHQHQHQFAP  360
HQLHHQQEQT GEMRARGSMP SPNQKDSSLD VNSTASKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646932.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-147POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1U8IHZ60.0A0A1U8IHZ6_GOSHI; probable transcription factor PosF21
STRINGGorai.011G140400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-145bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]