PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21152_BGI-A2_v1.0

Common Name

F383_06971

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 241aa MW: 28383.9 Da PI: 7.0197

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21152_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.6e-27	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ kk +++ ++r+ tr gC+a+l++ ++ gkw+++ ++ Cotton_A_21152_BGI-A2_v1.0 75 EFYEMYGRHMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYKKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFV 157 6****************************************9988233344599*********************** PP FAR1 83 leHnHelap 91 +eHnH l+p Cotton_A_21152_BGI-A2_v1.0 158 KEHNHVLNP 166 ***9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-24	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MASTSNPELN TSRNYRQWLT ETFDGHEMLD DELSDSNLDG NGNLINPLDQ HFPMTMEHRE 60 PYIGMEFESA EDAREFYEMY GRHMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYK 120 KKETRVFTSR PATREGCNAM LRIAAKDGGK WVIYGFVKEH NHVLNPSKVP PRRSHRIAFC 180 EDEKDLKIRE LSTELHREKK KSAAYQEQLQ MVLNYIEEHT QRLSLKVNLV SNNLRELEYE 240 D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647423.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017647424.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0B0PJW4	1e-180	A0A0B0PJW4_GOSAR; Far1-related sequence 5-like protein
TrEMBL	A0A2P5YIA9	1e-180	A0A2P5YIA9_GOSBA; Uncharacterized protein
STRING	Gorai.011G141900.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-44	FAR1 family protein