PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21153_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 221aa MW: 25352.6 Da PI: 6.7163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21153_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	4e-19	60	143	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ ++r +C a+++++++k+g+w+++k++ + Cotton_A_21153_BGI-A2_v1.0 60 FYDDYARHVGFLTRVLSSHKSECDGLLFSRGLGCRGYHDGQTKVE-----LQKQDKQRESCSAMIHLRRDKNGRWVIKKFVRD 137 9*******************************87666655554.....5889999********************** PP FAR1 85 HnHela 90 HnH+l+ Cotton_A_21153_BGI-A2_v1.0 138 HNHPLV 143 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-16	60	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSCFGFYLTN LCASVGEQVD DVDGRLEVST VDESNVHDYD TIQEPYVGMI FESEGAAKTF 60 YDDYARHVGF LTRVLSSHKS ECDGLLFSRG LGCRGYHDGQ TKVELQKQDK QRESCSAMIH 120 LRRDKNGRWV IKKFVRDHNH PLVIQLGESR RTLDEEKDNK IQELTAELRV KKRLSASYRE 180 LLLAVVKEVE DHNNNLSMKV QRTLDNLKKL DAEAKELLSG R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647397.1	1e-150	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0B0MRJ8	1e-148	A0A0B0MRJ8_GOSAR; Far1-related sequence 5-like protein
TrEMBL	A0A2P5WLE7	1e-148	A0A2P5WLE7_GOSBA; Uncharacterized protein
STRING	Gorai.011G142000.1	1e-140	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22264	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-52	FAR1 family protein