PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21357_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 268aa MW: 29791.2 Da PI: 9.5572

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21357_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	97.7	1.7e-30	147	264	1	121
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lL++cA+a+s+++ + + l+a+ + +s +g+p+qRl ay++e+L a+ s+s++y+al+++e + ++ l+++++ Cotton_A_21357_BGI-A2_v1.0 147 LKQLLIACAKALSENNIDKFNMLIAKARVAVSTYGEPIQRLGAYMVEGLVAKKEASGSNIYRALRCQEPE---GKDLLTYMHT 226 689****************************************************************9...9***** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisq 121 ++++ P+lkf++++aN+aI ea +e+++HiiDf+i q Cotton_A_21357_BGI-A2_v1.0 227 LYKIYPYLKFGYMAANRAIAEACRTEDCIHIIDFQIAQ 264 **********************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.289	121	268	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-28	147	264	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MLGYMMDFVI TVTGLKRTGL FKASGDFWKG IWCVVDVFPQ GVGVKAYCRR GTSFIEDANS 60 SHKIVYTSQE LGTAVTASDG ANEVTNKPKT NGQRYRASSK DCQGSSMRQP RTTFVSNRRQ 120 STEAAHVEKR LTAIEDLSLQ SIPPGNLKQL LIACAKALSE NNIDKFNMLI AKARVAVSTY 180 GEPIQRLGAY MVEGLVAKKE ASGSNIYRAL RCQEPEGKDL LTYMHTLYKI YPYLKFGYMA 240 ANRAIAEACR TEDCIHIIDF QIAQRTRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-12	154	264	26	139	Protein SCARECROW
5b3h_A	6e-12	154	264	25	138	Protein SCARECROW
5b3h_D	6e-12	154	264	25	138	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728495.1	1e-139	PREDICTED: scarecrow-like protein 21
Refseq	XP_016728496.1	1e-139	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	1e-47	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2P5Y9N2	1e-142	A0A2P5Y9N2_GOSBA; Uncharacterized protein
STRING	Gorai.009G427800.1	1e-130	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	1e-42	SCARECROW-like 21

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]