PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21402_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 671aa    MW: 73386.3 Da    PI: 7.8672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21402_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07267287526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ +++ G Ck Gd+C +aHg
  Cotton_A_21402_BGI-A2_v1.0 267 PCPEYRK-GSCKQGDNCEYAHG 287
                                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.2E-1618170IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-1440144IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-760133IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.70864139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.226494IPR002110Ankyrin repeat
CDDcd002041.47E-1366168No hitNo description
PROSITE profilePS5008810.71399134IPR002110Ankyrin repeat
SMARTSM002480.002299131IPR002110Ankyrin repeat
SMARTSM003562.5E-4262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5266288IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4267287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972267289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4294325IPR000571Zinc finger, CCCH-type
SMARTSM0035617297320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202297321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MCSVAMGKST QTGGAKQKFS DLLELSASND LISFRIAIEE EGHDIDEPSL WYGRRIGTKK  60
MGFEERTPLL IASIFGCKDV VNYIIKSGQV DVNRACGSDG ARALHCAAAG GSSGSPEIVK  120
ILLNACADIN SVDANGNRPG DLIAPASCNS DCSSRKKLLE ALLKSNVDGR EGFPFRVGNE  180
MDVSEVQVDS IHRVWKDGNE KKEYPYDLTL PDIKNGMYGT DEFRMYTFKI QPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YVYSCVPCPE YRKGSCKQGD NCEYAHGIFE SWLHPAQYRT  300
RLCKDETNCN RRVCFFAHKP EELRPLYAST GSALPSPRSY SGSGLEFGSM SPLAPASPSV  360
IKPSTSTPPL TPTGTSSIGG SMWPNQSSIV PPTLQLPFSR LKAARTARGK DLNMDKLSLE  420
THRRFQQQQQ QLEQSPTSWN NPLSGELNRF GGVKSTSLDD IFGSLDSTKP QLQGLSLEAA  480
SPQLQSPTAV PKWQNLNQQL RASYPTNLAS SPIMMSPTFG VETSGPTAAS SLSSKRSPSV  540
IERPAGNRNS GFSTPASPVG AMPPNLSDWG SVDGKLDWGI QGEELKKLRK SASLVFLNNG  600
SNLPNTARSL PSTSEEPEAS RVQPHMNGST HSAGQVRPED QKQQKCHNTG NSDMLSAWME  660
QLYKDQDQIL N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624012.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U8M1840.0A0A1U8M184_GOSHI; zinc finger CCCH domain-containing protein 66-like
STRINGGorai.004G007300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein