PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21459_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 695aa    MW: 78073.5 Da    PI: 5.6868
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21459_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.81.3e-43772161133
                      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eea 79 
                                 gg++r+++ +E+E++k+RER+RRa++a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  +++
  Cotton_A_21459_BGI-A2_v1.0  77 GGARRSRPLEEKERTKLRERHRRALTARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSS 159
                                 6899*****************************************************************98888999997444 PP

                      DUF822  80 eaagssas..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                                 +   ss+s   s++++ + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Cotton_A_21459_BGI-A2_v1.0 160 AGLTSSSSemLSQQAPPTsLQGVSSGYCALVEYNACHMKGVFMPTPAPYDLSSSGHS 216
                                 44444443346677766657789999***********************98876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.4E-3879215IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514458.43E-182259694IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.7E-200262694IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.4E-105268688IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69299313IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69320338IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69342363IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060346354IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008422.7E-9425434IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.8E-69435457IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69508527IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69542558IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69559570IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-69577600IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.7E-9580590IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.8E-69617639IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.7E-9668682IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.7E-9683695IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
PGLEWEVKSA DMQKLIGANE EDDEEEIEMD VKEEDNENGQ KHISAQMMLG ADGVMPSTSH  60
QFQIQQQLQE QVSTPGGGAR RSRPLEEKER TKLRERHRRA LTARILAGLR KHGNYNLRVR  120
ADINDVIAAL AREAGWVVLP DGTTFPSRSQ GSRPAGDSSA GLTSSSSEML SQQAPPTSLQ  180
GVSSGYCALV EYNACHMKGV FMPTPAPYDL SSSGHSQSSG MVGNGGEQTE SLPLIAGSME  240
VINDKQIIGL PLKLPERDFA GTPYVPVYVM LPLGVVNMKC ELVDPDGLLK QLRVLKSINV  300
DGVMIDCWWG IVEAHAPQEY NWNGYRKLFQ MVHELKLKLQ VVMSFHECGG NVGDDVCIPL  360
PHWVAEIGRS NPDIFFTDRE GRRNTECLSW GIDKERVLRG RTAVEVYFDF MRSFRVEFNE  420
FFEDGIISMV EVGLGPCGEL RYPSCPVKHG WRYPGIGEFQ CYDQYMLKSL RKAAEMRGHS  480
FWARGPDNAG SYSSHPHETG FFCDEGDYDG YYGRFFLNWY SELLINHGDL VLSLAKLAFE  540
GSCIAAKLPG IHWWYKTSSH AAELTAGFYN PCNRDGYIAI AAMLHKHRAA LNFACAELQF  600
LEQLEDLQEA LANPQGLVWQ VLNAAWEACI TVVSENAFVC HDRVGYNKIL ENVKPVNDPD  660
GRHFSSFTYL RLTPLLMERQ NFMEFERFVK RMHGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-15626469411443Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627232.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1U8L7A20.0A0A1U8L7A2_GOSHI; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]