PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21533_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 408aa    MW: 46609.4 Da    PI: 5.8694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21533_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-1948136298
                                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                  k++++s+v+   +l lp +f++ h+   ++++t++ledesg++++  +i     +r+ l++GWk F  +++L egD++vF+l
  Cotton_A_21533_BGI-A2_v1.0  48 MKTMVRSNVTHGFWLHLPMPFCKLHMP--KQDTTIILEDESGEEYKASYIA----QRTALSAGWKAFSADHKLVEGDVLVFHL 124
                                 699*******************99974..4889****************43....3456************************ PP

                                 -SSSEE..EEEEE- CS
                          B3  85 dgrsefelvvkvfr 98 
                                 +g+s+f  +v ++r
  Cotton_A_21533_BGI-A2_v1.0 125 IGSSKF--KVYIVR 136
                                 **9999..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2243136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-2343137IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-2545136No hitNo description
PROSITE profilePS5086313.12647138IPR003340B3 DNA binding domain
SMARTSM010192.0E-2047141IPR003340B3 DNA binding domain
PfamPF023623.3E-1748136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLMGTKIDEP QIPEMSLDPP EITNPQPNVM EQVEEIQANL AGRFPSCMKT MVRSNVTHGF  60
WLHLPMPFCK LHMPKQDTTI ILEDESGEEY KASYIAQRTA LSAGWKAFSA DHKLVEGDVL  120
VFHLIGSSKF KVYIVRAFKS SEVDQCFRSL EVDIQAKPIR SIRMKRTKRP SKKAKCLELL  180
PLDPSDDNVE NKSLMVLDTN SEHLTDRYDN DNKDPSSGLD NGIKSLASVI DFKEIKSIDN  240
FIIIVNGSRI DSELSQYHRT KYYELCCSQN SFLHDNLLES ISSKLAAEII TQIINIAEAI  300
RACKISTSQA DYTLWDKTLK GFELLGMNVG FLRAKLNRLN TLSLELQEGV DTERSKEQDH  360
MKEEKKSLER KLVKLKEAMH KLDTEIETLK ENAEKYELIF REEVTAAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632901.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
RefseqXP_017632902.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U8LIU10.0A0A1U8LIU1_GOSHI; B3 domain-containing protein Os01g0234100-like
STRINGGorai.005G238600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-38B3 family protein