PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21534_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 100aa MW: 11628.8 Da PI: 10.4275

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21534_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.1	2.9e-17	1	84	5	94
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++ps v + +++lpk+f++ + ++ + + t++l e+g+++++++ +++k l++GWk+F k++gL +gD +vF+l++ s+ Cotton_A_21534_BGI-A2_v1.0 1 MIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKRFSKEHGLLVGDALVFHLIRPSK 79 5788888999*******666.44.45679***********655555....9**********************9899 PP E..EE CS B3 90 felvv 94 f+ + Cotton_A_21534_BGI-A2_v1.0 80 FKVLS 84 96655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	4.87E-19	1	83	No hit	No description
Pfam	PF02362	1.4E-14	1	86	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	1	88	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.75E-20	1	86	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.5E-12	1	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.3E-17	2	83	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MIPSVVCRGF WMSLPKEFCQ LNLPNHDATV ILVGETGKEY RINFLVQRKA LSGGWKRFSK 60 EHGLLVGDAL VFHLIRPSKF KVLSHIYIYI HKKIYKLKET

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632750.1	2e-56	PREDICTED: B3 domain-containing protein Os01g0234100-like
Swissprot	Q10QS9	1e-24	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A0D2RSA7	4e-54	A0A0D2RSA7_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2SMJ6	4e-54	A0A0D2SMJ6_GOSRA; Uncharacterized protein
STRING	Gorai.005G238700.1	7e-55	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22268	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-22	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]