PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21615_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 390aa    MW: 42976.1 Da    PI: 8.801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21615_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.5e-131152344
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                ien+s r  ++ kRr+g+ KK  EL +LC++e  ++i+s + 
  Cotton_A_21615_BGI-A2_v1.0 11 IENSSARRASLRKRRQGLVKKVTELTTLCGVEGGIVIYSRNE 52
                                9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.974153IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-18160IPR002100Transcription factor, MADS-box
CDDcd002665.53E-26285No hitNo description
SuperFamilySSF554551.24E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTRKKVKLAW IENSSARRAS LRKRRQGLVK KVTELTTLCG VEGGIVIYSR NEKEPIVWLS  60
REEVERLLRK FNEVPEVERM KRSMNLETYY KEMISKSQDQ LRKQNRKNKE MKVGQLMLQV  120
EQGKMPDDFN VNELHDMIWY GETMRTDIRK LMEFYEQFPS SSVGLTQGDA PLPPPPPQGR  180
APAVGQTIGI ANAGVGDKDT SEYFPREDRL NSNTNTNYIR GEASSSIRRE MGLTYHNLFA  240
AATGDHLKLP GSSLGGVGNS SLQKPRPSHG GSSRIAPEPG LTGFSYGGSS SAAIEPRSSM  300
PPFGYDSSSS VRTANPELPP FEPLRDDLLK GDNIGPFDND MGPGHYPLGP LESSSPASDF  360
GGNPSRFFGG ESSSHGAAGS RETGPFDDKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIENSSARRASLRKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147610.0JX614761.1 Gossypium hirsutum clone NBRI_GE58390 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610068.10.0PREDICTED: uncharacterized protein LOC108455991
TrEMBLA0A1U8IDB70.0A0A1U8IDB7_GOSHI; uncharacterized protein LOC107895417
STRINGGorai.006G153500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-26AGAMOUS-like 48