PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21628_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 191aa    MW: 21486.3 Da    PI: 4.762
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21628_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP45.61.9e-1466984476
                                TTTSSEEETTT--SS--S-STTTT-------S- CS
                         SBP 44 qqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                                q    fh ls+fDe+krsCrr+L++hn+rrr+k
  Cotton_A_21628_BGI-A2_v1.0 66 QNERMFHLLSDFDEGKRSCRRKLERHNNRRRRK 98
                                55567*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.0071598IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-1166101IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.8E-46685IPR004333Transcription factor, SBP-box
PfamPF031104.7E-86698IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVVSGLGDGG YENEMMEGPS ENVTVRVRMM MLVRELRMMN KKDDRGLWGD CMMLSGVIRW  60
MCCWWQNERM FHLLSDFDEG KRSCRRKLER HNNRRRRKPV GSKTEVNKES LGAVQSEDIA  120
CDGEAGKDDL SLSGQTAEEP PFESEDGLVS ADCSAPMLQT VNNDSTVALI DTGTDGGKED  180
LKCSITTIFY K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18496RRKLERHNNRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482070.15e-71PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
RefseqXP_017649675.11e-70PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
RefseqXP_017649676.16e-71PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A0D2N8B11e-72A0A0D2N8B1_GOSRA; Uncharacterized protein
STRINGGorai.005G056500.14e-70(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63582644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.25e-10squamosa promoter binding protein-like 7