PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21639_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 137aa    MW: 16257.2 Da    PI: 9.3023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21639_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.4e-0850812556
                                --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56
                                +s++e  +L+++lg + rq+ +WFq rRa +k
  Cotton_A_21639_BGI-A2_v1.0 50 VSRKEEMKLSRELGHQPRQIVIWFQCRRAEWK 81
                                5789999************************9 PP
2HD-ZIP_I/II69.75.9e-23521182692
                 HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                                  ++ ++l+reLg qprq+ +WFq rRA +k+kqlE+ y++Lk+ yd +++e+++L++ev+ L++ l+
  Cotton_A_21639_BGI-A2_v1.0  52 RKEEMKLSRELGHQPRQIVIWFQCRRAEWKAKQLERLYDTLKHDYDVISREKQKLQDEVNYLAQGLM 118
                                 567899******************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.8E-55081IPR001356Homeobox domain
SuperFamilySSF466891.37E-95095IPR009057Homeodomain-like
CDDcd000864.03E-55184No hitNo description
Gene3DG3DSA:1.10.10.606.6E-95190IPR009057Homeodomain-like
PROSITE profilePS500719.7185183IPR001356Homeobox domain
PfamPF021832.0E-783114IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDWNGTFASR PQPTLNSHYN YNYDKCPVKQ GQKSSYNAQE KTTTVYWRGV SRKEEMKLSR  60
ELGHQPRQIV IWFQCRRAEW KAKQLERLYD TLKHDYDVIS REKQKLQDEV NYLAQGLMDN  120
VQNPDSLSMH SSPNLNT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027573.28e-36PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X1
TrEMBLA0A2P5WQQ44e-93A0A2P5WQQ4_GOSBA; Uncharacterized protein
STRINGEOY080757e-36(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.19e-26homeobox 51