PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21696_BGI-A2_v1.0
Common NameF383_28659
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 922aa    MW: 101254 Da    PI: 4.6776
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21696_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.11.1e-11849892952
                                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                 +++ ++L e F++n+yp+++++e+L k+l++t rqV+ WF N R
  Cotton_A_21696_BGI-A2_v1.0 849 ETEKQRLCESFRENQYPDRATKERLGKELDMTFRQVSKWFENAR 892
                                 567899************************************99 PP
2PHD39.21.5e-13484538150
                                 SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                         PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                                 +C+ Cg+    ++++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Cotton_A_21696_BGI-A2_v1.0 484 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 538
                                 699***977677********77********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.75E-15474542IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-13481537IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941482539IPR019787Zinc finger, PHD-finger
PfamPF006283.7E-11484538IPR019787Zinc finger, PHD-finger
CDDcd155042.35E-26484536No hitNo description
SMARTSM002499.1E-10484537IPR001965Zinc finger, PHD-type
PROSITE patternPS013590485536IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.3E-13827892IPR009057Homeodomain-like
PROSITE profilePS5007111.953838898IPR001356Homeobox domain
SuperFamilySSF466895.56E-11841895IPR009057Homeodomain-like
SMARTSM003891.3E-7841902IPR001356Homeobox domain
CDDcd000864.76E-10845892No hitNo description
PfamPF000463.5E-9849892IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MGVSPPETKS EKGNHFAPEE TTSEQAHELG SEYLHTELSE NKHPCGYART RNESAETATG  60
VSCSDIHESS SGYVDKNSPP EHLGLLPKYA SEHNPPDNSF CHQETVSGMT HEYGSGYVHE  120
TSEKKHQPGS DIVQNNLEEA CTLVCGLPAE HLRPCSEEFS KNTLTERLGV LPEDSSKCTQ  180
IDQLSCPQLG SVEPTAAFGS INTSKELGEP TEQQQQLGSE SLSNGIVKSP TATSHNAFYQ  240
ALELNPEVMN QSNCGQSLQS PSEGASIVSQ IGKSYLVEPL GLPPGFESGN SCVQQPKLHS  300
EDMAQSSGVE QHEATPKNFL ENSVQGRDGE SSKTRKKYTP RPLSSSDRVL RSKSQEKSKA  360
SELSNNITDI GSSEQQKGKN RNKMIEKREV SDEYSRIRSH LRYLVNRINY ERSLIAAYST  420
EGWKGLSLEK LKPEKELQRA TSEILRRKLK IRDLFQRIDS LCAEGRLPES LFDSKGEIDS  480
EDIFCAKCGS KDLSANNDII LCDGVCDRGF HQYCLQPPLL KEDIPPGDEG WLCPGCYCKL  540
FCIELVNESQ GTSFCLADSW EKVFPEAVVA AGGQNQDPNL ELPSDDSDDS DYNADNSEPD  600
EKDQGDESSS DQSDFTCSSE ELEVPRNVDP CLGLLSDDSE DDDYDPDGPD HDNVAEPESS  660
TSDFTSDSED LGAMLKVNSS SPKDEVPVSN IGSTDSKGKK PKLGGNESRS DEPSSIMDSA  720
SGQDGTAVSK KRSSEKLDYK KLYDETYVNF PSSSSDDEDW SDTIAPRKRK RCAAGASSAP  780
ENGNASSSRS VSISEGSKLN PEHKLRRNMR HNSNFKDTNL SPAELKGGTS GSGSSDKKAG  840
SSTHRRLGET EKQRLCESFR ENQYPDRATK ERLGKELDMT FRQVSKWFEN ARWSFNHPTS  900
NQETAAKRVA ENAIASAFPK KN
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643002.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049961e-135HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0B0PK650.0A0A0B0PK65_GOSAR; Homeobox-leucine zipper protein HAT3
STRINGGorai.005G234300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-92Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]