PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21716_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 272aa    MW: 29180.2 Da    PI: 7.4989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21716_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032103125123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+k F++   L  H  +H
  Cotton_A_21716_BGI-A2_v1.0 103 YKCSVCNKAFPSYQALGGHKASH 125
                                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.69E-8103125No hitNo description
PfamPF139126.9E-14103127IPR007087Zinc finger, C2H2
SMARTSM003550.0057103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576674.69E-8152179No hitNo description
SMARTSM0035560157179IPR015880Zinc finger, C2H2-like
PfamPF139129.5E-10160181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALEALKSPT MATAPYSNKY EDIDNNYVDT WKKGKRSKRQ RDDESSSSPP PPTNEEEYLA  60
LCLIMLARGG STTENAVTDG GNDDHLMSSS SSAPAPAALK LSYKCSVCNK AFPSYQALGG  120
HKASHRKSST DAKPDNQSIT TNSTTASGET GGNGKAHKWS ICHKAFPTGQ ALGGHKRCHY  180
EGGNITTTIT TTTTNNNNKS SSVSLSGVTV SDGGALSQTR CVDFDFDLNL PALCELENKD  240
GSRFSQIYTE QEVESPLPTK KPRFMTASLA QH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0026320.0HM002632.1 Gossypium hirsutum C2H2 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644934.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A2P5XK761e-168A0A2P5XK76_GOSBA; Uncharacterized protein
STRINGGorai.005G232300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-45salt tolerance zinc finger