PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21857_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21204.1 Da PI: 6.4015

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21857_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42	1.2e-13	6	55	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kr+ n++ r +t+ kRr+ +lK ELS L ++v +++fs+tg++ ++ Cotton_A_21857_BGI-A2_v1.0 6 KRSGNSRSRRITYVKRRESVLKQPAELSMLYHIDVGLMMFSPTGQFTSFA 55 7899******************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.9E-6	1	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.02E-15	4	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.703	4	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-12	10	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MAEKMKRSGN SRSRRITYVK RRESVLKQPA ELSMLYHIDV GLMMFSPTGQ FTSFAHKGRV 60 QDIFLRYLDH NDEHKECVFL IFAIFVLYES LKRLKYEAEV LDKLGRSYNP DMTKILTISE 120 ADLHQQFVMD AILRIEKLKM SGSTAEGAAS SGTERTQLAD DHNDENIEQP EPSASEGHFL 180 EVQVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617909.1	1e-114	PREDICTED: agamous-like MADS-box protein AGL66
TrEMBL	A0A2P5SJV8	9e-96	A0A2P5SJV8_GOSBA; Uncharacterized protein
STRING	Gorai.013G071800.1	1e-73	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16598	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-16	AGAMOUS-like 66