PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21898_BGI-A2_v1.0
Common NameF383_14935
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 155aa    MW: 17071.8 Da    PI: 10.7164
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21898_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.7e-20539135
                        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Cotton_A_21898_BGI-A2_v1.0  5 CTDCKTTKTPLWRGGPSGPKSLCNACGIKYRKRRR 39
                                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-15154IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13339No hitNo description
Gene3DG3DSA:3.30.50.107.0E-16339IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.08E-13441No hitNo description
PfamPF003201.7E-17539IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.637535IPR000679Zinc finger, GATA-type
PROSITE patternPS003440530IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKKFCTDCKT TKTPLWRGGP SGPKSLCNAC GIKYRKRRRA MLGLNEASEK KKVKWHLSSS  60
SSLSSSSTIT TSSASIATTN DESVDDMKPS GRFSGLGETV KIRLLALSGE VLLQRSLSLT  120
WVVKKQRCQR RRKVGEDEEL AAFSLMAMSY GLVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619449.11e-110PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0B0PXZ41e-108A0A0B0PXZ4_GOSAR; GATA transcription factor 15-like protein
STRINGGorai.013G206400.17e-92(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-18GATA transcription factor 15