PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22053_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 249aa    MW: 28365.7 Da    PI: 6.2824
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22053_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-3054111359
                                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqK++kgs++pr+YY+C+++ gC +kk+ver+++d ++++itY+++Hnh+
  Cotton_A_22053_BGI-A2_v1.0  54 DSWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLAKKQVERCKTDASMLIITYTSSHNHP 111
                                 99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-3147113IPR003657WRKY domain
SuperFamilySSF1182909.42E-2650113IPR003657WRKY domain
SMARTSM007748.9E-3652112IPR003657WRKY domain
PROSITE profilePS5081131.19254113IPR003657WRKY domain
PfamPF031068.9E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFLFYINTEL VHSRQHAFNF GHVFITRKVV ERTVVTVKIG ENGGKLKNDG PPYDSWSWRK  60
YGQKPIKGSP YPRGYYKCST SKGCLAKKQV ERCKTDASML IITYTSSHNH PSPHLHNTKT  120
LSQSPTKEPQ SSDDDDDGDN DDQAPTTKQE HLPDKDEEYF HYLQSPLSFP QNKEEDPFSG  180
NLERSTVGLL LDKEPVSCCS HMKVAAASPI PKSEENDFFD ELEELPICSA FTWFMRSKFF  240
DEGIHVVPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20541131879Disease resistance protein RRS1
5w3x_D2e-20541131879Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384760.0KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636978.11e-166PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A0D2U2T51e-144A0A0D2U2T5_GOSRA; Uncharacterized protein
STRINGGorai.008G138900.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-27WRKY DNA-binding protein 65