PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22262_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 346aa    MW: 38366.4 Da    PI: 6.6487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22262_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18233267135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cotton_A_22262_BGI-A2_v1.0 233 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 267
                                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-781324IPR016679Transcription factor, GATA, plant
SMARTSM004013.9E-15227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714227263IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-15229291No hitNo description
CDDcd002027.62E-14232279No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13232265IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.3E-15233267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEFIQESSYC GGDHFIVEDL LDFSNDDAVF TDGTFDSSLA LSHSTDSSTF TPVDSCNSSL  60
FSVCEPNTGT DIGCRGLNDD QFAGDLSLPY DDLAELEWLS NFVEESFSCE HLQKLHLISG  120
LKTRPEKSSE TRGTQAVDGD SDHSNSNGSS IFDPDMAVPA KARSKRSRAA PCNWASRLLA  180
LSLTSSSSEP GTDVAVRVQP PLTNQTGKKP VKTTSSKKKD GGEVATNPDG WKCLHCATDK  240
TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTKHSNSHRK VLELRRQKER  300
VRAQQQHHHQ PFTRHHHHHQ NMVYDVSNGD DYLIHQYVSP DFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645039.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-86GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0D2UC740.0A0A0D2UC74_GOSRA; GATA transcription factor
STRINGGorai.010G106100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]