PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22342_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 236aa    MW: 28232.9 Da    PI: 8.8164
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22342_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.71e-202721386
                    trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                +r e+++++ ++k++k lWe +s +mre+gf+rs +qCk+kw+nl +ryk ++++e++     ++++p++++l+
  Cotton_A_22342_BGI-A2_v1.0  2 IRAELDRSFMETKRNKLLWEVISTRMREKGFNRSTEQCKCKWKNLVTRYKGCETMEEEA---MRQQFPFYNELQ 72
                                7999*****************************************************95...56689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122038.66E-17154No hitNo description
PfamPF138375.0E-16574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MIRAELDRSF METKRNKLLW EVISTRMREK GFNRSTEQCK CKWKNLVTRY KGCETMEEEA  60
MRQQFPFYNE LQAIFSARMQ SILWSESEGG ATGSKRKAVQ LSSDEEEDTE EKELEKSSVR  120
KKKQGKTSGG AGIGGSTSGN GNNSNNIKEI LEDFMRQQMQ MEMQWREAFE ARENERRLKE  180
MEWRQKMEAL ENERILMDRR WYEREEQRRM REEARAEKRD TLITALLNKL RRDDHM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1277682e-52JN127768.1 Theobroma cacao clone TCC_BC011L18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605653.11e-171PREDICTED: trihelix transcription factor GT-3b
SwissprotQ9SDW02e-65TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1U8HYF71e-168A0A1U8HYF7_GOSHI; trihelix transcription factor GT-3b-like
STRINGGorai.006G183000.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-46Trihelix family protein