PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22352_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 249aa MW: 27214.4 Da PI: 5.2985

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22352_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.6	1.6e-16	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +ps++e ++ k l ++ +++V++WFqNrR + ++ Cotton_A_22352_BGI-A2_v1.0 22 RSRWTPKPEQILILESIFNSgMVNPSKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 82 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.6	7.6e-35	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Cotton_A_22352_BGI-A2_v1.0 21 VRSRWTPKPEQILILESIFNSGMVNPSKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-15	15	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.936	18	83	IPR001356	Homeobox domain
SMART	SM00389	1.4E-7	20	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-9	21	87	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-14	22	82	IPR001356	Homeobox domain
CDD	cd00086	0.00284	22	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEDNGPDPNS PSHVSERSEP VRSRWTPKPE QILILESIFN SGMVNPSKDE TVRIRKLLEK 60 FGSVGDANVF YWFQNRRSRS RRRQRQLQAS LAAGSEQRNN NPQAQAVYGG GAIQYDSSGA 120 AAAAAMGFAP PPFHVGSSSS CGVMGDDGFE NLLSMSAQMG FQELGQSSSV SETSNLHYQT 180 GFITVFINGV PTEVPRGPLD VKAMFGEDVD LVHSSGVPIP INEFGFLLQT LQHGESYFLV 240 TPFTSLFLY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618411.1	1e-178	PREDICTED: WUSCHEL-related homeobox 11
Refseq	XP_017618412.1	1e-178	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	8e-72	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2P5QE38	0.0	A0A2P5QE38_GOSBA; Uncharacterized protein
STRING	Gorai.013G196400.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-70	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]