PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22353_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 294aa    MW: 32668.6 Da    PI: 8.5687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22353_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-165196147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Cotton_A_22353_BGI-A2_v1.0 51 RGHWRPAEDAKLMELVTYYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 96
                                899*****************************.***********996 PP
2Myb_DNA-binding52.61.1e-16104145245
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                  ++T+eE+e l+ a++++G++ W++Iar +  gRt++ +k++w+
  Cotton_A_22353_BGI-A2_v1.0 104 RNFTEEEEEMLLVAHRLHGNK-WARIARLFD-GRTDNAVKNHWH 145
                                 68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.824697IPR017930Myb domain
SMARTSM007171.3E-115099IPR001005SANT/Myb domain
PfamPF002496.9E-155196IPR001005SANT/Myb domain
SuperFamilySSF466897.65E-2851144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2652104IPR009057Homeodomain-like
CDDcd001677.49E-115495No hitNo description
PROSITE profilePS5129424.05398152IPR017930Myb domain
SMARTSM007176.8E-14102150IPR001005SANT/Myb domain
PfamPF002493.4E-14104145IPR001005SANT/Myb domain
CDDcd001673.87E-11105145No hitNo description
Gene3DG3DSA:1.10.10.603.8E-20105151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRTAGCDGKN EIWGVEEKGL TLNLDGEEDE SNKNSSTVSG CKSGNTKLCS RGHWRPAEDA  60
KLMELVTYYG PQNWNLIAEH LEGRSGKSCR LRWFNQLDPR INKRNFTEEE EEMLLVAHRL  120
HGNKWARIAR LFDGRTDNAV KNHWHVITAR KHREKSGVYK RKKPPSYACR ALPKGLGLTI  180
VNSSCSASDQ STISSNIDQS AKVSSPVHQM DVSRRCSLFE NVATRGIGYV VYQQGLMEAV  240
MSVNRSATSL DSNSEVSAES VGTNWTSHFI SGESCGNGNE KIPFIDFLGV GRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33511517107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149163RKHREKSGVYKRKKP
2150162KHREKSGVYKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527260.0KM052726.1 Gossypium hirsutum LOF-like transcription factor LOF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618737.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A2P5WCX10.0A0A2P5WCX1_GOSBA; Uncharacterized protein
STRINGGorai.013G196500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-67myb domain protein 105