PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22698_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 158aa    MW: 17754.9 Da    PI: 8.0768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22698_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023860123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C +C++ F ++  L  H++ H
  Cotton_A_22698_BGI-A2_v1.0 38 FPCLYCPRKFYTSQALGGHQNAH 60
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-53665No hitNo description
PROSITE profilePS5015710.5753865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MADPSMYNFF NQPEPSSASK PIKKHPQTAS PSAPPRLFPC LYCPRKFYTS QALGGHQNAH  60
RRERAASRRK FPGGDHDQIR GAQQYNLQQQ LNPFPSFKIE PPMDYPGAQY LDQCLQPHYF  120
PSTGFIPQGF TSVSSSETLS PTIDDVDEPA NVDLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635748.11e-115PREDICTED: zinc finger protein KNUCKLES
TrEMBLA0A2P5R8R98e-97A0A2P5R8R9_GOSBA; Uncharacterized protein
STRINGGorai.001G274200.16e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.17e-18C2H2 family protein