PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22907_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 242aa MW: 27180.5 Da PI: 8.5707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22907_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.2e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+F++ + L H++ H Cotton_A_22907_BGI-A2_v1.0 35 FVCYRCPKRFTSTYALGGHQNAH 57 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-4	33	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.04E-5	33	62	No hit	No description
PROSITE profile	PS50157	11.032	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MPNRTILGNA SSAETSNPIT PSVSSETSQE ITHPFVCYRC PKRFTSTYAL GGHQNAHKKE 60 RNEELRLYNE RRLAFSRQST VPADGRAKTK RALAVLTNQS STPSYGPMVQ FLPVVPLPGF 120 MCMYANPKSL VFVPAGFEYG RTRAGLNGKE VPYEGSHQEN EKRHPYNRPL DIKPMAMKLY 180 PNEERFFGPK TKEDNGCSKE YYSVSTTNNV GPHGEALIDE SREDDADQKS SKVEELDLTL 240 RL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622092.1	0.0	PREDICTED: uncharacterized protein LOC108466266
TrEMBL	A0A1U8LSS3	1e-174	A0A1U8LSS3_GOSHI; uncharacterized protein LOC107930472
TrEMBL	A0A2P5WQ45	1e-174	A0A2P5WQ45_GOSBA; Uncharacterized protein
STRING	Gorai.002G223400.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19978	4	5