PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22934_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 197aa MW: 22330.4 Da PI: 9.1427

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22934_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.2	1.5e-32	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Cotton_A_22934_BGI-A2_v1.0 118 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDNSIVVTTYEGIHNHP 176 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-33	104	176	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-28	111	177	IPR003657	WRKY domain
PROSITE profile	PS50811	28.828	113	178	IPR003657	WRKY domain
SMART	SM00774	8.0E-38	118	177	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MDGQELISTP PPAAQPLTAP FLFAPSTTPS SSLHPLPPLE SQIIPDIDWV SLLYGQALLL 60 QGHDESKPMT EAASSLMAEN GGCHQIENGN QDKRKGNRFK KTTRPRFAFQ TRSADDILDD 120 GYRWRKYGQK AVKNSNYPRS YYRCTHHTCN VKKQVQRLSK DNSIVVTTYE GIHNHPCEKL 180 METLTPLLKQ MQFLARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	108	175	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	108	175	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031103	0.0	KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625778.1	1e-149	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8GY11	2e-54	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A2P5XJE0	1e-134	A0A2P5XJE0_GOSBA; Uncharacterized protein
STRING	Gorai.004G155100.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-56	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]