PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23027_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 305aa    MW: 34006.2 Da    PI: 8.2267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23027_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.2e-15226251126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +ktelC+ +++tG C+yGd C+FaHg
  Cotton_A_23027_BGI-A2_v1.0 226 FKTELCNKWQETGACPYGDHCQFAHG 251
                                 79***********************8 PP
2zf-CCCH18.73e-06264288125
                                 --S---SGGGGTS--TTTTT-SS-S CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                 ykte Cr  +++  C+yG rC+F H
  Cotton_A_23027_BGI-A2_v1.0 264 YKTEVCRMVLAGDVCPYGHRCHFRH 288
                                 9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-19220258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-11222257IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286225253IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-12226251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-12259292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-8259294IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821263291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQNDNFATVY GDLAAKQSKD HQSDGVFSSS TTSSSTSAAS VFALYHPRIL MQQHQDMINR  60
HNLCLTRLRE AAKEVEALRQ ENTSLRSANR DLNKQLSALI QVSVQNHFSS TDYKTTPFEL  120
VNALRGLCLG SGGGGEVDVS DESPTSVMEG GAVDVERVML PKSISVRSNG YLKMMNQAGA  180
SHRGKTRGPT RTGNTSQLSG AQKVYVQGGK KEEEPLELEV YNQGMFKTEL CNKWQETGAC  240
PYGDHCQFAH GIEELRPVIR HPRYKTEVCR MVLAGDVCPY GHRCHFRHAL TEQEKFMDHL  300
KPRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22226292470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774601e-113JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735926.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X2
SwissprotQ9C9F55e-93C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1U8NA090.0A0A1U8NA09_GOSHI; zinc finger CCCH domain-containing protein 15-like isoform X2
STRINGGorai.008G157500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-85C3H family protein