PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23093_BGI-A2_v1.0
Common NameF383_27189
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 333aa    MW: 35647.6 Da    PI: 8.2997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23093_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11267312655
                                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  Cotton_A_23093_BGI-A2_v1.0 267 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 312
                                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14264327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-11265316No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13266324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MYPSSSSQKP MGQSGLTRYG SAPGSFLANA VDSIIGADPN LVGHYFSAAD SSSLTSESTC  60
KVSSSNDPRE PKSAAAAAPA PPHPPPHHPH GSYPAPSSSS LLRQRSSPAG FLSHLTSENG  120
FSVTMGNRNY SSQGSGNGGH GVSRLKSQLS FTRQDSLSQI SEVSENLVDG VSSNSNHQNP  180
AHSFAAAGFG MDSWDNTNSI VFSAPSSKRA KNLDGDIYNC FNALETQFSL PQTTLEMATV  240
EKLLHIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM  300
LDLAVQHIKG LQNEVQKLHK ELESCTCGCK QSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646940.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1022e-98BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0B0P5440.0A0A0B0P544_GOSAR; Transcription factor protein
STRINGGorai.011G144600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]