PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23215_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 312aa    MW: 35077.6 Da    PI: 7.3709
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23215_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33158215259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dgy+WrKYGqK vk+s+fprsYYrCt+ +C+vkk+ver+ +dp++v++tYeg+H+h+
  Cotton_A_23215_BGI-A2_v1.0 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTISCNVKKRVERCFSDPSIVVTTYEGQHTHP 215
                                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.5E-1101312IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.809.0E-35142217IPR003657WRKY domain
SuperFamilySSF1182901.57E-29149217IPR003657WRKY domain
PROSITE profilePS5081131.238152217IPR003657WRKY domain
SMARTSM007741.2E-39157216IPR003657WRKY domain
PfamPF031065.9E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERKEGVKVE DVLGNSSCSV NDFPLQSIFD LSSNEEEKIR SLGFMDLLGV QDLICSPVLE  60
IMAAQQVPSL MATQPPNPFS CTKIESPHEV FNQPATPNSS TISSASSEAA HDEPAKLDDQ  120
EEDQRKTKKQ LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY  180
YRCTTISCNV KKRVERCFSD PSIVVTTYEG QHTHPSPVMP RPNLVGSHLN SAISAASFGM  240
PMQTTPSHYH QHFQQPFTDN LSPLNFGHNG SLNATFLHQK RFCTPGPEPG PSLLKDHGLL  300
QDILPSHMLK EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-271502171077Probable WRKY transcription factor 4
2lex_A6e-271502171077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5518450.0KJ551845.1 Gossypium hirsutum WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629418.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-69WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8L2040.0A0A1U8L204_GOSHI; WRKY transcription factor
STRINGGorai.007G121200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-60WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]