PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23424_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 175aa    MW: 19365.9 Da    PI: 6.9341
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23424_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.56.3e-5629122194
                       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                 vreqdr+lPian+srimk++lP+n+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+epl
  Cotton_A_23424_BGI-A2_v1.0  29 VREQDRYLPIANISRIMKRALPTNGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPL 111
                                 69********************************************************************************* PP

                       NF-YB  84 kvylkkyrele 94 
                                 k+yl++yre +
  Cotton_A_23424_BGI-A2_v1.0 112 KIYLARYREGD 122
                                 ********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-5325123IPR009072Histone-fold
SuperFamilySSF471134.35E-3932124IPR009072Histone-fold
PfamPF008084.5E-283599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-216381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-2182100No hitNo description
PRINTSPR006153.4E-21101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MADGMARGPT SPAEGSHESG EQCSSHSTVR EQDRYLPIAN ISRIMKRALP TNGKIAKDAK  60
ETVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLLWAMA TLGFEDYIEP LKIYLARYRE  120
GDAKGSIRGE VPLKRDAVRV LAVPNPQFPI QGSLNYINSQ AQGHHMIVPS MQGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4828120193NF-YB
4awl_B3e-4828120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4828120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648163.11e-128PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X3
RefseqXP_017648164.11e-128PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X3
RefseqXP_017648165.11e-128PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X3
RefseqXP_017648166.11e-128PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X3
SwissprotQ8VYK45e-69NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2P5Y7K81e-127A0A2P5Y7K8_GOSBA; Uncharacterized protein
STRINGGorai.011G241600.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-71nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]