PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23498_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 223aa    MW: 24634.9 Da    PI: 8.2004
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23498_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.52.1e-282103197
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C + Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg
  Cotton_A_23498_BGI-A2_v1.0   2 SCNGCRVLRKGCRETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVG 84 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelall 97 
                                 ++++++++++q++++++l+
  Cotton_A_23498_BGI-A2_v1.0  85 LLSSGNWHICQAAVDTVLR 103
                                 ************9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.3241107IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCNGCRVLR KGCRETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGSLRPV SEISAGVWRP  120
SCDESTDRFC GDESYHFPSR YAESNPLMRM MMMENQSASA ASDLSLSLTT TKSGNGRRAG  180
RRYEEEKKRA KTMSMYSEGS EITASESNEY EGSQERKILK LFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749355.11e-164PREDICTED: LOB domain-containing protein 39-like
RefseqXP_017605038.11e-164PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE84e-65LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1U8PDY21e-163A0A1U8PDY2_GOSHI; LOB domain-containing protein 39-like
STRINGGorai.009G218800.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.17e-65LOB domain-containing protein 39