PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23520_BGI-A2_v1.0
Common NameF383_18686
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 432aa    MW: 47728 Da    PI: 5.1532
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23520_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34251162102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+++++++sws+++nsfvv++  efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF++ 
  Cotton_A_23520_BGI-A2_v1.0  25 FLSKTYDVVDDPSTDSVVSWSSDNNSFVVWKVPEFARDLLPMYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANV 98 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+k+ l+ i r+k 
  Cotton_A_23520_BGI-A2_v1.0  99 GFLRGQKHALKAISRRKP 116
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3220114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-5421114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
METLHGSVPS ACADTAANGN TVTPFLSKTY DVVDDPSTDS VVSWSSDNNS FVVWKVPEFA  60
RDLLPMYFKH NNFSSFVRQL NTYGFKKVDP DRWEFANVGF LRGQKHALKA ISRRKPANVH  120
CNQQQNSSIG ACVDVGKFGL QEEVEGLKRD KNVLMQELVR LRQQQQATDN QLQAYGQRVQ  180
MMEQRQQQMM SFLAKVMQTP GFLNQLLQQQ NESNRQLTGA NKKRRLHRQD EENLTGENGA  240
VSPNGQTVKF QPLHNEHQMM EVNTSPRREH GAPPSSALHS SSSSSEISEV TLPEVSPASW  300
QSYLQAESGV PDSSLSTAAA QLTTETSVHK SQKDAIFGSV PQMLGFVPDN TVGPESRHAE  360
YLDPMSVVSN ATMPVEADES CAGQDMEIML DGSPKLPAIN DTFWEHFLTG SPLTGDTDEI  420
NSSSLENGAY GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2431147129Heat shock factor protein 1
5d5v_B5e-2431147129Heat shock factor protein 1
5d5v_D5e-2431147129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674190.0KR067419.1 Gossypium hirsutum HSF38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620311.10.0PREDICTED: heat stress transcription factor A-1b-like isoform X1
SwissprotO818211e-133HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0B0MIR90.0A0A0B0MIR9_GOSAR; Heat stress transcription factor A-1b-like protein
STRINGGorai.013G183500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-82heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]