PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23549_BGI-A2_v1.0
Common NameF383_12297
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 308aa    MW: 34230.8 Da    PI: 10.0883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23549_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31239296359
                                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYeg+Hnh+
  Cotton_A_23549_BGI-A2_v1.0 239 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLIVTYEGDHNHS 296
                                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-13188235IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.6E-33225296IPR003657WRKY domain
PROSITE profilePS5081130.446232298IPR003657WRKY domain
SuperFamilySSF1182901.7E-26234296IPR003657WRKY domain
SMARTSM007743.3E-37237297IPR003657WRKY domain
PfamPF031061.0E-26239295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELMLSYRNN NNGFSSKMEE TAVQEAASGL ESVEKLIKLL SQTQQNYTSN NQEKKFQSSP  60
TRSSMDLEMD CKVTAEAAVS KFKKVISLLG RTRTGHARFR RAPLPPPPTT TVTEHETKVY  120
QPTPIQQIPL PVTTYLERKE SPTTTINFSY SSTTTTADNN SNKQPSSSTF QISNLSSAGK  180
PPLSSSLKRK CSIENLGSGI KCNSSSCRCH CSTKKRKQRT KRVVRVPAIS LKMADIPPDD  240
YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERALD DASMLIVTYE GDHNHSLSVA  300
ETTILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21225297273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2078670.0GU207867.1 Gossypium hirsutum WRKY15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619609.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221767e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0B0NGA30.0A0A0B0NGA3_GOSAR; Putative WRKY transcription factor 15-like protein
TrEMBLA0A2P5XYG70.0A0A2P5XYG7_GOSBA; Uncharacterized protein
STRINGGorai.003G026600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.17e-73WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]