PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23658_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 230aa    MW: 25478.1 Da    PI: 4.6681
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23658_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.6e-081154239
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                + r C+ +++ ++ l+C+ ++  lC +C  e H+       H++
  Cotton_A_23658_BGI-A2_v1.0 11 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfskHSR 54
                                6789******99*********************65777777776 PP
2zf-B_box30.95.6e-105499242
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                                + + C+ ++  ++++fCe+ q+ +C +C  e+Hk      H+++p+
  Cotton_A_23658_BGI-A2_v1.0 54 RSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFsssslHNRRPI 99
                                5689*****************************8899999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-141057IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2061057IPR000315B-box-type zinc finger
PfamPF006431.2E-61155IPR000315B-box-type zinc finger
CDDcd000211.97E-61345No hitNo description
PROSITE profilePS5011910.5095399IPR000315B-box-type zinc finger
PfamPF006431.3E-75599IPR000315B-box-type zinc finger
CDDcd000211.61E-55799No hitNo description
SMARTSM003360.195899IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTDQRRSNQK QGRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFS KHSRSQLCDA  60
CDGSPASIFC ETEQSVFCSN CDWESHKFSS SSLHNRRPIE GFTGCPSVNE LVSIVGIEDL  120
GEKKGGDDCG YDDGWLDLLS WENPVISSFD DLLVSSDSDH GFKPTDVLPL PKNRNANCGQ  180
HKEEVLHQLR ELAKSEPILS FDNTGDLQTG TVHTSCTNDT APIPFPAYEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717167.11e-171PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822568e-72COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1U8LRG41e-170A0A1U8LRG4_GOSHI; zinc finger protein CONSTANS-LIKE 13-like
STRINGGorai.008G008400.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.27e-69B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]