PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23721_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 297aa    MW: 33794.9 Da    PI: 7.0997
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23721_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.4e-152378257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                +kR   t+ q+ +Le++++ +r  s e++++LA +lgLt++q++ WF+ rR k+k+
  Cotton_A_23721_BGI-A2_v1.0 23 KKRAVKTPAQVIVLENFYKDERFASDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 78
                                89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-16879IPR009057Homeodomain-like
PROSITE profilePS5007114.7711979IPR001356Homeobox domain
SuperFamilySSF466897.27E-142079IPR009057Homeodomain-like
SMARTSM003894.9E-112183IPR001356Homeobox domain
CDDcd000865.72E-152379No hitNo description
PfamPF000466.8E-132378IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNVGDELEEV QIEEDKVSLD VNKKRAVKTP AQVIVLENFY KDERFASDEM KAKLAVQLGL  60
TQKQISSWFC HRRLKDKRRD DYYANVQHDY SSGVIQDHVS GLRQDSCGSI KQGDYRYIDL  120
REVESRIIHG QGFPAADLTY ERRSHQYPYG VQMEDPSSES SLSLHDQLFL KSGNPYDMHI  180
SAKPTQNGAI VQTNSSSKSI GYKPSGYLKV RGQSENPVIS AVKRQMGRHY REDGPVLGIQ  240
FDPLPPGAFE FPSSHPVNGI CCADHGDVRS KCMREISLVF EREALGHSPF VYKFYYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179RRLKDKRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5253611e-32HQ525361.1 Gossypium herbaceum clone NBRI_C_EYT27PB01CB7VA simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636152.10.0PREDICTED: homeobox-DDT domain protein RLT1-like
TrEMBLA0A0B0NB291e-175A0A0B0NB29_GOSAR; Homeobox 10
STRINGGorai.001G134800.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-54HB-other family protein