PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23873_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 285aa    MW: 32227.6 Da    PI: 5.9985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23873_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.44e-141257146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46
                                +g+WT eEde+l ++vk++G++ W++I r mg + Rt+k+c++rw +
  Cotton_A_23873_BGI-A2_v1.0 12 KGPWTGEEDEILMNYVKKYGPKGWSSI-RSMGlLPRTGKSCRLRWVN 57
                                79************************9.6777788**********87 PP
2Myb_DNA-binding45.41.9e-1468107344
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                 ++++eE+   +++ +++G++ W++Iar+++ gRt++++k++w
  Cotton_A_23873_BGI-A2_v1.0  68 KFSAEEERVVIELQAEFGNK-WAKIARHLP-GRTDNDVKNFW 107
                                 79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6159IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-21760IPR009057Homeodomain-like
SuperFamilySSF466891.91E-2910107IPR009057Homeodomain-like
SMARTSM007174.8E-121161IPR001005SANT/Myb domain
PfamPF002495.5E-121257IPR001005SANT/Myb domain
CDDcd001679.23E-121459No hitNo description
PROSITE profilePS5129421.28860115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-1861113IPR009057Homeodomain-like
SMARTSM007171.4E-1265113IPR001005SANT/Myb domain
CDDcd001671.31E-1168107No hitNo description
PfamPF002491.2E-1268107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MERQSDGTYI KKGPWTGEED EILMNYVKKY GPKGWSSIRS MGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS AEEERVVIEL QAEFGNKWAK IARHLPGRTD NDVKNFWSAR RKRLERISHT  120
PKSKGKDHDV LHEMPMVEVV PSNGVPLEQG SSSHQHPFFP GNTEEFKMVP LPDLIKPDFL  180
NMETGLSALD IEPIRMIPQL QLDLPILPDS FDFNFAAMFN NQEASESESK PISLTKIPSA  240
GTKGSDAELG KKENIGNSAT PDSFFDEFPT DMFDCLEPLV SSSEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640158.10.0PREDICTED: transcription repressor MYB5-like
TrEMBLA0A2P5YG220.0A0A2P5YG22_GOSBA; Uncharacterized protein
STRINGGorai.003G112700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2229145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-63MYB family protein