PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23916_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 61aa    MW: 7020.39 Da    PI: 11.1386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23916_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.8e-171159350
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                                i+n+s r  ++ kRr g++KK +EL +LC+ ++++ii+s +  +l  +s
  Cotton_A_23916_BGI-A2_v1.0 11 ISNDSARRASLKKRRLGLMKKMSELTTLCGSKACLIIYSLDeSELMAWS 59
                                9**************************************7615788777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.979149IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-17160IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-8323IPR002100Transcription factor, MADS-box
CDDcd002665.34E-20361No hitNo description
PfamPF003199.1E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MRRKKVTLAW ISNDSARRAS LKKRRLGLMK KMSELTTLCG SKACLIIYSL DESELMAWSS  60
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAWISNDSARRASLKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488326.11e-26PREDICTED: MADS-box transcription factor PHERES 1-like
RefseqXP_016722546.11e-26PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A0D2SQC23e-25A0A0D2SQC2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8M6W53e-25A0A1U8M6W5_GOSHI; MADS-box transcription factor PHERES 1-like
TrEMBLA0A2P5PX883e-25A0A2P5PX88_GOSBA; Uncharacterized protein
STRINGGorai.007G363700.15e-26(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-11AGAMOUS-like 80