PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23920_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 216aa    MW: 25250.1 Da    PI: 4.5573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23920_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.32.2e-17397299
                         NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82
                                  GfrF+Ptdee++ e L +kv+g++ +e++++i + +iy++eP++L+ +  ++  +++e y++++r++ +      + ++ +g 
  Cotton_A_23920_BGI-A2_v1.0  3 LTGFRFSPTDEEII-EILSQKVSGNTsMEAFDFIIQKNIYDFEPQELHgSerTIGLNKNERYYYCRRESDS------REVMGKGW 80
                                57************.88****999997899999**************8424455568889******98753......448899** PP

                         NAM 83 Wkatgkdkevlskkgel 99
                                Wkat + k+v s +ge+
  Cotton_A_23920_BGI-A2_v1.0 81 WKATSHLKAVSSPNGEE 97
                                **********9986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5632137IPR003441NAC domain
SuperFamilySSF1019414.18E-163106IPR003441NAC domain
PfamPF023657.9E-8491IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVLTGFRFSP TDEEIIEILS QKVSGNTSME AFDFIIQKNI YDFEPQELHG SERTIGLNKN  60
ERYYYCRRES DSREVMGKGW WKATSHLKAV SSPNGEEWRL CKIKYKGKEK VEEDMTPTEK  120
TFRHSTNKTL LTSFEAKDCS SGSSNSIAPM QLELAFEQPP LTQPILPVNN DINYYYDNYC  180
WSNSNMMLYE DHQLADQLDT LSEQPFSDLW SWDDYH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5862412e-58JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632835.11e-160PREDICTED: uncharacterized protein LOC108475386
TrEMBLA0A2P5XL831e-149A0A2P5XL83_GOSBA; Uncharacterized protein
STRINGGorai.005G020600.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.15e-11NAC domain containing protein 94