PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24059_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 200aa MW: 21687.4 Da PI: 8.2367

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24059_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.4	7.6e-36	38	190	7	112
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnss 86 +++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++a +c +s ++s+++ Cotton_A_24059_BGI-A2_v1.0 38 TSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTTPAaheISC--ASGLTTTSSPT 118 689********************************************************77777433233..22222222222 PP TCP 87 sg..............................................kaaksaakskksqksaasalnlak 112 ++ ++++++a ++++ a++ +++ k Cotton_A_24059_BGI-A2_v1.0 119 EScqlhpvgigsgvvagmytvttpppscrldlcqpmgfqystvgrngyQHMPFTALLLQPTAAAEEEQQVGK 190 223344455555555556556666666666666665555555555555555555544444444444455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-30	38	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	39	93	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAFHKFSATS NRTNSNLNSS LAGESTPKAQ LRKPIPLTSK DRHTKVNGRG RRVRMPALCA 60 ARIFQLTREL GHRSDGETIE WLLRQAEPSI IAATGSGTTP AAHEISCASG LTTTSSPTES 120 CQLHPVGIGS GVVAGMYTVT TPPPSCRLDL CQPMGFQYST VGRNGYQHMP FTALLLQPTA 180 AAEEEQQVGK EEEEEKRHQE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605243.1	1e-148	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	6e-45	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0D2QBD5	1e-126	A0A0D2QBD5_GOSRA; Uncharacterized protein
STRING	Gorai.006G165300.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	8e-47	TCP family protein