PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24114_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 110aa MW: 12442.2 Da PI: 5.7504

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24114_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.7e-06	70	90	3	23
HHHHHHHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeL 23 ++h+e+ErrRR+riN ++ L Cotton_A_24114_BGI-A2_v1.0 70 KSHSEAERRRRERINAHLDPL 90 58*************999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-4	70	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MAAYYFNDNI FLFGNCYFGF LDPFSGDLGP CNGISQSLVL DNEKSELVVK SPVKVGKKSV 60 AEEKVIAALK SHSEAERRRR ERINAHLDPL LIIRCNYQVV QVEDKVEYEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635773.1	4e-51	PREDICTED: transcription factor AIG1-like isoform X1
TrEMBL	A0A2P5WRX8	4e-54	A0A2P5WRX8_GOSBA; Uncharacterized protein
STRING	Gorai.011G034000.1	6e-44	(Gossypium raimondii)