PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24179_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 246aa MW: 27302.8 Da PI: 5.5644

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24179_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	32	91	2	55
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 ++R+t+t++q+++L++l+++ r psa+++++++++l +++ ++V++WFqN++a++ Cotton_A_24179_BGI-A2_v1.0 32 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARY 91 58***************8678*********************************96 PP
2	Wus_type_Homeobox	106.9	1.2e-34	31	90	2	60
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaR Cotton_A_24179_BGI-A2_v1.0 31 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKAR 90 789*************9779***********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-6	10	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-10	11	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.264	28	94	IPR001356	Homeobox domain
SMART	SM00389	2.2E-4	30	98	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-16	33	91	IPR001356	Homeobox domain
CDD	cd00086	6.74E-7	33	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEPQHQHQQP HPNDDNSSGG SGKGSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPSAD 60 QIQRISARLR QYGKIEGKNV FYWFQNHKAR YAPSSPPSTG VLTVGQIGHY GYGSMTMEKS 120 FRDCSISACG SSSGGASHNL GWVGMDPAYT TSSYAFFDKK KLFGEEQEGD EEEEEEEGAA 180 VAPHIETLPL FPMHGEDINA FCSNMKPQSA DSCYSSWYRS DDGYTASRAS LELSLNSYNA 240 RSQDSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447418	3e-70	AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647644.1	1e-151	PREDICTED: protein WUSCHEL-like
Swissprot	Q8LL11	1e-79	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1U8IF18	1e-145	A0A1U8IF18_GOSHI; protein WUSCHEL-like
TrEMBL	A0A2P5QJ93	1e-145	A0A2P5QJ93_GOSBA; Uncharacterized protein
STRING	Gorai.011G098600.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5244	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-36	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]