PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24280_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 221aa MW: 25115.5 Da PI: 9.358

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24280_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.9e-32	55	108	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Cotton_A_24280_BGI-A2_v1.0 55 PRLRWTPELHLSFVRAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 108 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-30	51	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.7	51	111	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-15	53	109	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-22	55	110	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-10	56	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLMKKNPLNL YDEDEEGDDG TKARDGASSS NSIVEECEKK ASPNGVRHYV RSKMPRLRWT 60 PELHLSFVRA VERLGGQERA TPKLVLQLMN IKGLSIAHVK SHLQMYRSKK INDQGKDDYL 120 PQNLWHQSTL HDHQRVISQQ PVNEMVHACE SNGAQIQPML MYMHPSFANK WPGKGAERQG 180 MSKRKPLDED LDLSLSLSTK LRRKTSNEEE AANSNLSLSL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618792.1	1e-155	PREDICTED: putative two-component response regulator ARR20
TrEMBL	A0A1U8JG56	1e-151	A0A1U8JG56_GOSHI; putative two-component response regulator ARR20
STRING	Gorai.004G233300.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-43	G2-like family protein