PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24283_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 501aa    MW: 56604.3 Da    PI: 4.4146
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24283_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS164.21.1e-501445012374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  +lL +c +a+ s+++elaq+++ rl+e asp+g++++Rla+y+t  L ++ +           ++e+    s++  aa++++
  Cotton_A_24283_BGI-A2_v1.0 144 LHLLKACGDAMGSKQMELAQEIIRRLNEKASPTGKSIERLAFYLTLSLDKQANY---------LMQEA----SKNYDAAFNAL 213
                                 699***********************************************9998.........22222....3445567889* PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetg 162
                                 ++++P+ +f+h+taN+aIle++    +v Hi+Dfdi++G+QWpaL+++L    +g  +lR+T+++ +e++     +++ eet+
  Cotton_A_24283_BGI-A2_v1.0 214 YQIFPYGRFAHFTANSAILESIPAYATVlHIVDFDIGKGIQWPALIETLGR--QGLRTLRLTTIKWEEEDgscnATTSFEETK 294
                                 **********************9996666********************98..6999********999989999999****** PP

                        GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvv 239
                                 ++L k A+++g+++e + +   ++e l ++  +vk  +E la n+++ l ++   ++ + ++ +e+L + k l     s  ++
  Cotton_A_24283_BGI-A2_v1.0 295 KQLCKHAKTFGLRMEVEEM---DIEGL-MS--KVKMdNEWLAFNCMVVLPHME--KQRSVKHVEEFLTTAKALlrsdtSKGII 369
                                 ***************9986...44444.33..344359*************96..444444589***9999875444245578 PP

                        GRAS 240 vvveqe.adh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                 ++ +   ++   + +sF   f   l y+ al++s+e+   +  e+ri +E  ++ ++++++v +++ +  e +    +    l
  Cotton_A_24283_BGI-A2_v1.0 370 TLGDGIgIKKwtDYTSFDSFFEAQLVYFQALLESMEQF--QFLEARIAMECLFVVPHLCSLVNAQQWK--ETCS---T-GCSL 444
                                 887754333342556777777788***********999..556*********************9998..3333...3.4679 PP

                        GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                 ++ G++p ++s +++ +a+ l+r+ + s   + e e+++++vlg ++ pLv vS+W+
  Cotton_A_24283_BGI-A2_v1.0 445 TKLGLEPRRMSWENYLEAEELVRQAEgSCWVKTEgENNNEMVLGYMGAPLVRVSSWT 501
                                 9*************************43334455788*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.971117479IPR005202Transcription factor GRAS
PfamPF035143.8E-48144501IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEFHASWPTY NPIGLPIEDE GFCLADMDAL VNSFKFSTSS VSIEHFSDIS SSTPYVDEAY  60
SSHFLSTHLP GILQWVNEGD TPNDQFSLDG VENYCSEQMF MEDVSCQNLS PTSAEVSMDV  120
IPLVQAYLVL PDESMEIDNQ TSILHLLKAC GDAMGSKQME LAQEIIRRLN EKASPTGKSI  180
ERLAFYLTLS LDKQANYLMQ EASKNYDAAF NALYQIFPYG RFAHFTANSA ILESIPAYAT  240
VLHIVDFDIG KGIQWPALIE TLGRQGLRTL RLTTIKWEEE DGSCNATTSF EETKKQLCKH  300
AKTFGLRMEV EEMDIEGLMS KVKMDNEWLA FNCMVVLPHM EKQRSVKHVE EFLTTAKALL  360
RSDTSKGIIT LGDGIGIKKW TDYTSFDSFF EAQLVYFQAL LESMEQFQFL EARIAMECLF  420
VVPHLCSLVN AQQWKETCST GCSLTKLGLE PRRMSWENYL EAEELVRQAE GSCWVKTEGE  480
NNNEMVLGYM GAPLVRVSSW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-151434054270GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617932.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5W6Y00.0A0A2P5W6Y0_GOSBA; Uncharacterized protein
STRINGGorai.004G233600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1927257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.13e-20RGA-like protein 3