PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24335_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 159aa    MW: 18931 Da    PI: 11.4054
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24335_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.4e-242771591
                        FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                                r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw vt++++eHnH+l+p
  Cotton_A_24335_BGI-A2_v1.0  2 RVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWIVTRFVKEHNHQLVP 77
                                566778999**********************99.9****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-22277IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRVDAFRRSM RDGKVVWRRL VCNKEGFRKL RPRRSENRKP RAITREGCKA MIVVKKEKTG  60
KWIVTRFVKE HNHQLVPIPV NGRRSMLLSQ TPDEKDVKIR ELTAELQRER KRSAAIQEQL  120
DMVLREMEEH SNHLSRNIDD IVQSVREIES NPVAHFKRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623132.11e-113PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBLA0A1U8NWR61e-111A0A1U8NWR6_GOSHI; protein FAR1-RELATED SEQUENCE 1-like isoform X2
STRINGGorai.N002600.11e-106(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135242227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.19e-77FAR1 family protein