PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24336_BGI-A2_v1.0

Common Name

F383_15907

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 258aa MW: 30087.1 Da PI: 6.4081

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24336_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.1	1.9e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkl 81 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+ Cotton_A_24336_BGI-A2_v1.0 78 EFYISYGRHIGFTVRIHHNRRSRINNSVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKF 159 6****************************************99983333.244899********************* PP FAR1 82 eleHnHela 90 ++eHnH+l+ Cotton_A_24336_BGI-A2_v1.0 160 VKEHNHSLM 168 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-23	78	168	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:3.40.50.300	5.4E-4	175	242	IPR027417	P-loop containing nucleoside triphosphate hydrolase

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MENVSSQGID SDESVRCLQV ENFDEQELVD HGISDNIDLC LGEVDKIIEE SSEGLPLLRN 60 AAEPYIGMEF KSRDAAREFY ISYGRHIGFT VRIHHNRRSR INNSVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSTK 180 NLITEDEKDQ RIRELTQELN NEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKKVQDIVK 240 NISELEEERL EDSDCRYV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625906.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0B0NC58	0.0	A0A0B0NC58_GOSAR; Far1-related sequence 5-like protein
STRING	Gorai.N002500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-37	FAR1 family protein