PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24436_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 85aa    MW: 9591.75 Da    PI: 8.9305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24436_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000261939323
                                ETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                C++Cg +F++++   +H r H
  Cotton_A_24436_BGI-A2_v1.0 19 CHKCGWPFPNPHPSAKHRRAH 39
                                ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MDHGRHHSSG HESHGVHLCH KCGWPFPNPH PSAKHRRAHK KICGTIEGFK LVPSAEQITR  60
TNGSDDEPVP YDDHKNPNTK VPKFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699271.14e-52PREDICTED: uncharacterized protein LOC107914758
RefseqXP_016714214.18e-51PREDICTED: uncharacterized protein LOC107927611
RefseqXP_017649878.17e-51PREDICTED: uncharacterized protein LOC108489692 isoform X1
RefseqXP_017649879.17e-51PREDICTED: uncharacterized protein LOC108489692 isoform X2
TrEMBLA0A1U8K9T48e-51A0A1U8K9T4_GOSHI; uncharacterized protein LOC107914758
TrEMBLA0A2P5YWL31e-49A0A2P5YWL3_GOSBA; Uncharacterized protein
STRINGGorai.011G150900.14e-50(Gossypium raimondii)