PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24473_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 118aa MW: 13495.5 Da PI: 10.2648

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24473_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.7e-11	37	92	1	57
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e+e k+ + k+kNR++A +sR+R ++ + Leekv++L +eN aL k+l +l+ +a Cotton_A_24473_BGI-A2_v1.0 37 EAEQKKRKNKIKNRISAAKSRARSQENTRFLEEKVEQLRNEN-ALLKKLLSLETAAA 92 67899*************************************.57778888887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.9E-10	34	90	No hit	No description
Pfam	PF00170	1.8E-8	37	87	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.9E-4	37	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.565	39	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	41	89	No hit	No description
PROSITE pattern	PS00036	0	44	59	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MQVLAADAPS GSGELLIMND LPVYKRGRNK IQEAIKEAEQ KKRKNKIKNR ISAAKSRARS 60 QENTRFLEEK VEQLRNENAL LKKLLSLETA AAERLPEERE VMQGKKAKQC LEPEEQHT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665725.1	4e-65	PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like isoform X3
Refseq	XP_016665726.1	4e-65	PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like isoform X3
Refseq	XP_017613654.1	6e-65	PREDICTED: cyclic AMP-dependent transcription factor ATF-3-like
TrEMBL	A0A1U8HI40	8e-64	A0A1U8HI40_GOSHI; protein ABSCISIC ACID-INSENSITIVE 5-like isoform X3
STRING	Gorai.009G085700.1	1e-46	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35750	2	2