PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24596_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 233aa    MW: 25197.9 Da    PI: 8.4883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24596_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002185107123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+k F++   L  H  +H
  Cotton_A_24596_BGI-A2_v1.0  85 YKCSVCDKAFPSYQALGGHKASH 107
                                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-584110No hitNo description
PROSITE profilePS5015710.13885112IPR007087Zinc finger, C2H2
PfamPF139124.0E-1485109IPR007087Zinc finger, C2H2
SMARTSM003550.006385107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PfamPF139123.6E-5144158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MALEALNSPT MPTPFTNKYD DIDNWKKGKR SKRLRTDSPT TPTTEEEYLA LCLIMLARGS  60
PQGAAHHHPH SSSSSAHPLH LNLSYKCSVC DKAFPSYQAL GGHKASHRKP STAQNPSITT  120
ETNAAGSSGR GRSHEFPIAH KSSPTGQALG GHKRCHYEGG NNNSSSYKSG SVSGVTLSDG  180
GALSQSHRLN FDFDLNMPAC EENEDGRFGQ IYAEQEVESP LPTKKPHVLM VKA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8377020.0JQ837702.1 Gossypium hirsutum cultivar ZM3 ZFP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636508.11e-174PREDICTED: zinc finger protein ZAT10-like
TrEMBLI0B6711e-145I0B671_GOSHI; ZFP
STRINGGorai.008G020700.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-42salt tolerance zinc finger