PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24653_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 247aa    MW: 28461.9 Da    PI: 6.7833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24653_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-18855148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Cotton_A_24653_BGI-A2_v1.0  8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                                79********************************************97 PP
2Myb_DNA-binding538.1e-1761106148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T+ E+ l +++++++G++ W++I+r+++ gRt++++k++w++++
  Cotton_A_24653_BGI-A2_v1.0  61 RGKMTPHEERLVLELHAKWGNR-WSRISRKLP-GRTDNEIKNYWRTHM 106
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.557355IPR017930Myb domain
SuperFamilySSF466899.73E-306102IPR009057Homeodomain-like
SMARTSM007175.2E-16757IPR001005SANT/Myb domain
PfamPF002498.9E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-21962IPR009057Homeodomain-like
CDDcd001671.13E-111055No hitNo description
PROSITE profilePS5129425.2456110IPR017930Myb domain
SMARTSM007172.7E-1660108IPR001005SANT/Myb domain
PfamPF002491.0E-1461105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2363108IPR009057Homeodomain-like
CDDcd001671.93E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVQDEIRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTPHEER LVLELHAKWG NRWSRISRKL PGRTDNEIKN YWRTHMRKTA QEKKRAIPIS  120
PSSSSSNCHS SSSTVTAVDS LPSSGTGNIV SFYDTGGLDM AGKKNSPEFE DGNGYSMDDI  180
WKDIDMSEEN TVIKPLSDNY SQQGCNFSWE YCWDTLWKMD DEEESKMFFP PNQLVSCFDF  240
GRESVTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2751081103MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-26111051159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-26111051159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641453.10.0PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ9LX826e-94MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1U8MZG10.0A0A1U8MZG1_GOSHI; transcription factor MYB59-like
STRINGGorai.001G107900.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.34e-94myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]