PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24712_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 813aa MW: 91725.6 Da PI: 9.8105

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24712_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	48	4.1e-15	667	708	16	58
CBFB_NFYA 16 kRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 kRRq R+kle+++kl +k rkpy+heS h h l+R+ g+gG+F Cotton_A_24712_BGI-A2_v1.0 667 KRRQYREKLEAQNKL-IKVRKPYMHESQHLHSLKRAIGNGGQF 708 8************.***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52058	1.46E-21	37	366	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	6.2E-18	47	131	IPR032675	Leucine-rich repeat domain, L domain-like
SMART	SM00369	5	63	86	IPR003591	Leucine-rich repeat, typical subtype
SMART	SM00369	14	111	134	IPR003591	Leucine-rich repeat, typical subtype
Gene3D	G3DSA:3.80.10.10	6.2E-18	205	357	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF04852	6.1E-52	496	613	IPR006936	ALOG domain
PROSITE profile	PS51697	63.958	500	627	IPR006936	ALOG domain
SMART	SM00521	7.0E-16	650	711	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	20.302	651	711	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.9E-8	654	676	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.6E-11	666	708	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.9E-8	685	708	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MANLVANVGG LGFSKQPKKE LQWDAKAMDN KQSELQESSN SPSWIAMYLQ STCDLAAIPP 60 LFFHNLQVLD LSHTNIKALP HSLPNSFFAL KKLLLRRCKL FMELSPHVGK LDNLEELDLD 120 DTEIISIPIG IGKLMKFTVG HHKRRTISRV PDEVEAQFTK WDKCLKFVNG ENIPFQVRKV 180 LKFTSSFFLD RHENASSLSE FGNENMVMLK YCLLVDCNKM ETIIDGAEVE TVLESLQYLS 240 IHYMKNLISI WKGPSRFGFM SKLKFLALHT CPKLSNIFSQ VLLRNFVNLE EIIVEDCPQV 300 SSLVSHVHAL PSLKPFLPSL KRLFLLYLPE LVSIAPKLER IGFYDCPKLK VLSKSELSSK 360 ALKTIKAEKQ WWEGIKWNKI DWKTGPRYLM HIFSPINNEK DVMAQLLEDR NVFEAQQSDC 420 MVKSMPLKGL RIPSSMTLPC LTVTRRLNIQ VEHTRGFLKT SGQLSDLVNN PGYNEQKISS 480 VGGSNSKAII SGAMPSTPSR HQSKKHRDWK TFCQYLNNHK PPISVPMCNA AHVLEFLKYL 540 DQFGKTKVHI SACSFFGQSN PPGPCGCPLR QAWGSVDALV GRLSSSYEDL GGKPEVNPFR 600 AGVVRIYLRE VRDAQNKARG ISYKKRKKSE IKVANTTTTT TTTTTTTTTT TTTTTITNTN 660 ILRCQNKRRQ YREKLEAQNK LIKVRKPYMH ESQHLHSLKR AIGNGGQFLN TKKLQQSKST 720 PTSHGPDMSR SPQLHLFANI SETDVHQPKN FKDSGSATSC SDVRSASNSD EMLQQPDFGF 780 SSYPPDHTGE AMPCHAGNIH GDGNLHHHSS HFQ

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MANLVANVGG LGFSKQPKKE LQWDAKAMDN KQSELQESSN SPSWIAMYLQ STCDLAAIPP  60
LFFHNLQVLD LSHTNIKALP HSLPNSFFAL KKLLLRRCKL FMELSPHVGK LDNLEELDLD  120
DTEIISIPIG IGKLMKFTVG HHKRRTISRV PDEVEAQFTK WDKCLKFVNG ENIPFQVRKV  180
LKFTSSFFLD RHENASSLSE FGNENMVMLK YCLLVDCNKM ETIIDGAEVE TVLESLQYLS  240
IHYMKNLISI WKGPSRFGFM SKLKFLALHT CPKLSNIFSQ VLLRNFVNLE EIIVEDCPQV  300
SSLVSHVHAL PSLKPFLPSL KRLFLLYLPE LVSIAPKLER IGFYDCPKLK VLSKSELSSK  360
ALKTIKAEKQ WWEGIKWNKI DWKTGPRYLM HIFSPINNEK DVMAQLLEDR NVFEAQQSDC  420
MVKSMPLKGL RIPSSMTLPC LTVTRRLNIQ VEHTRGFLKT SGQLSDLVNN PGYNEQKISS  480
VGGSNSKAII SGAMPSTPSR HQSKKHRDWK TFCQYLNNHK PPISVPMCNA AHVLEFLKYL  540
DQFGKTKVHI SACSFFGQSN PPGPCGCPLR QAWGSVDALV GRLSSSYEDL GGKPEVNPFR  600
AGVVRIYLRE VRDAQNKARG ISYKKRKKSE IKVANTTTTT TTTTTTTTTT TTTTTITNTN  660
ILRCQNKRRQ YREKLEAQNK LIKVRKPYMH ESQHLHSLKR AIGNGGQFLN TKKLQQSKST  720
PTSHGPDMSR SPQLHLFANI SETDVHQPKN FKDSGSATSC SDVRSASNSD EMLQQPDFGF  780
SSYPPDHTGE AMPCHAGNIH GDGNLHHHSS HFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	623	627	KKRKK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616341	1e-126	JX616341.1 Gossypium hirsutum clone NBRI_GE60921 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700361.1	0.0	PREDICTED: disease resistance protein At4g27190-like
TrEMBL	A0A2P5QZG7	0.0	A0A2P5QZG7_GOSBA; Uncharacterized protein
STRING	Gorai.011G226500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8020	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.3	3e-29	nuclear factor Y, subunit A3