PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24945_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 254aa    MW: 28950.8 Da    PI: 9.5329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24945_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.8e-51141381128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++ +r+nrat sgyW
  Cotton_A_24945_BGI-A2_v1.0  14 LPPGFRFHPTDEELVVQYLRRKVLACPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNTNRSNRATISGYW 92 
                                 79****************************.89***************54...46799************************* PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg dk+++++ ++++vg+kktLvfy+g+ap+g +tdW+mheyr+
  Cotton_A_24945_BGI-A2_v1.0  93 KATGIDKQIVTSrSNQAVGMKKTLVFYRGKAPNGCRTDWIMHEYRV 138
                                 ********999857778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5810174IPR003441NAC domain
PROSITE profilePS5100556.34414174IPR003441NAC domain
PfamPF023659.6E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLACP LPASIIPEVD VCKADPWDLP  60
GDLEQERYFF STREAKYPNT NRSNRATISG YWKATGIDKQ IVTSRSNQAV GMKKTLVFYR  120
GKAPNGCRTD WIMHEYRVVS TETAASNAPP NKKNQTQNNV VPMENWVLCR IFLKKRSAKN  180
DEEGLQSCNQ RIGKLRTSKP VFYDFLTKDR TDLNLAPSSS SSVSSGITQV SNNDTDDHEE  240
SSCCNSFPYF RRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521217915170NO APICAL MERISTEM PROTEIN
1ut4_B4e-521217915170NO APICAL MERISTEM PROTEIN
1ut7_A4e-521217915170NO APICAL MERISTEM PROTEIN
1ut7_B4e-521217915170NO APICAL MERISTEM PROTEIN
4dul_A4e-521217915170NAC domain-containing protein 19
4dul_B4e-521217915170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472290.0KC847229.1 Gossypium hirsutum NAC domain protein NAC52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612730.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY938e-99NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D2V5R50.0A0A0D2V5R5_GOSRA; Uncharacterized protein
TrEMBLW6JBA60.0W6JBA6_GOSHI; NAC domain protein NAC52
STRINGGorai.012G125500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]